International E-publication: Publish Projects, Dissertation, Theses, Books, Souvenir, Conference Proceeding with ISBN.  International E-Bulletin: Information/News regarding: Academics and Research

Persistent and Permanent Point of Views of Two Stages DNA Splicing Languages

    , , ,

Author Affiliations

  • 1Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang, Lebuhraya Tun Razak, 26300 Gambang, Kuantan Pahang Darul Makmur,. MALAYSIA
  • 2Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang, Lebuhraya Tun Razak, 26300 Gambang, Kuantan Pahang Darul Makmur,. MALAYSIA
  • 3Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang, Lebuhraya Tun Razak, 26300 Gambang, Kuantan Pahang Darul Makmur,. MALAYSIA
  • 4Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang, Lebuhraya Tun Razak, 26300 Gambang, Kuantan Pahang Darul Makmur,. MALAYSIA

Res. J. Mathematical & Statistical Sci., Volume 3, Issue (1), Pages 15-23, January,12 (2015)

Abstract

Yusof-Goode (Y-G) splicing system was formulated by Yusof in 2012 to present the existence relation between formal language theory and molecular biology in a convenient approach. In terms of biology, the recombinant deoxyribonucleic acid (DNA) molecules can often be split with the existence of actual restriction enzymes. For this property of the recombinant DNA strands is called persistent. Therefore, determining the persistency of the hybrid templets of DNA strands, after acting restriction enzymes on the initial DNA strands, by providing mathematical proof is considered as a new contribution in the areas of DNA molecular. In this work, the persistent and permanent aspects of two stages splicing languages are investigated and discussed via Y-G approach. This investigation focuses on number of cutting sites in initial strings as well as sequences factors of splicing rules. Accordingly, the persistency and permanency of the above splicing languages with respect to two initial strings (with two cutting sites) and two rulesare presented as lemmas, theorems, and corollaries. Nevertheless, an example is provided, which shows the real meaning of theorem in terms of biology.

References

  1. Kartz R.F., Molecular and Cell Biology for Dummies, Indiana Wiley, (2009)
  2. Walker J.M., Molecular Biology and Biotechnology, RSCPublishing 1-3 (2009)
  3. Yusof Y., DNA Splicing System Inspired by BioMolecular Operation, Ph. D. Thesis, Universiti TeknologiMalaysia, (2014)
  4. Head T., Formal Language Theory and DNA: An Analysisof the Generative Capacity of Specific RecombinantBehavior, Bulletin of Mathematical Biology, 49, 737-759(1987)
  5. Gatterdam R.W., Splicing System and Regularity, International Journal of Computer Math. 31, 63-67 (1989)
  6. Karimi F., Sarmin N.H. and Fong W.H., TheCharacterizations of Different SplicingSystem, International Journal of Modern Physics, 9, 89-94(2012)
  7. Karimi F., Mathematical Mdelling of Persistent SplicingSystem in DNAComputing, Ph. D. Thesis, UniversitiTeknologi Malaysia, (2013)
  8. Karimi F., Sarmin N.H. and Fong W.H., Some SufficientConditions for Persistent Splicing System, AustralianJournal of Basic and Applied Sciences, 5(1), 20-24 (2011)
  9. Karimi F., Sarmin N.H. and Fong W.H., CrossingPreservedand Persistent Splicing System, Proceeding ofthe Sixth International Conference on Bio-InspiredComputing: Theories and pplications (BIC-TA), 167-169(2011)
  10. Karimi F., Sarmin N.H. and Fong W.H., CommonCrossingand Persistent Splicing Systems, InternationalJournal of Applied Mathematics and Statistics, 43(13),293-296 (2013)
  11. Fong W.H., Sarmin N.H. and Karimi F., SomeCharacterizations of Permanent Splicing System,Proceeding of International Conference on EnablingScience and Nanotechnology (ESciNano), 1-2 (2012)
  12. Yusof Y., Sarmin N.H., Fong W.H, Goode T.E. andAhmad M.A., An Analysis of Four Variants of SplicingSystem, AIP Proceeding, 1522(1), 888-895 (2013)
  13. Yusof Y., Fong W.H., Sarmin N.H. and Karimi F., SomeRelations on Different Types of Splicing System, Journalof Fundamental and Applied Sciences. 6, 143-147 (2010)