Y-STR Polymorphism among Khandayat Community of Odisha, India

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Y-STR Polymorphism among Khandayat Community of Odisha, India

Author Affiliations

¹Amity Institute of Forensic Sciences (AIFS), Amity University, Noida, UP, INDIA Shriram Institute for Industrial Research, New Delhi, INDIA

Res. J. Forensic Sci., Volume 1, Issue (3), Pages 5-6, May,29 (2013)

Abstract

The study was conducted to determine the polymorphism and extent of genetic diversity at 9 Short Tandem Repeat (STR) loci of Y-chromosome among the Khandayat Community of Odisha. Blood samples were collected from 91 unrelated healthy individuals and genomic DNA was extracted by Organic Method. The DNA samples were amplified by multiplex-PCR followed by genotyping. Genotyping results of the 9 Y-STRs showed that all loci included in this study are highly polymorphic among the Khandayat population.

References

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Papiha S.S., Genetic variation in India, Hum Biol, 68, 607-628 (1996)
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Singh K.S., People of India: An Introduction, Anthropological Survey of India, Calcutta (1992)
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Bamshad, M., Kivisild, T., Scott Watkins, W., Dixon, M. E., Ricker, C. E., Rao, B. B., Mastan Naidu, J., Ravi Prasad, B. V., Govinda Reddy, P., Rasanayagam, A., Papiha, S. S., Villems, R., Redd, A. J., Hammer, M. F., Nguyen, S. V., Carroll, M. L., Batzer, M. A. and Jorde, L. B, Genetic evidence on the origins of Indian caste populations, Genome Res, 11, 994-1004 (2001)
de Knijff, P., Kayser, M., Caglia, A., Corach, D., Fretwell, N., Gehrig, C., Graziosi, G., Heidorn, F., Herrmann, S., Herzog, B., Hidding, M., Honda, K., Jobling, M., Krawczak, M., Leim, K., Meuser, S., Meyer, E., Oesterreich, W., Pandya, A., Parson, W., Penacino, G., Perez-Lezaun, A., Piccinini, A., Prinz, M., Schmitt, C., Schneider, P. M., Szibor, R., Teifel-Greding, J., Weichhold, G. M. and Roewer, L., Chromosome Y microsatellites: population genetic and evolutionary aspects, Int J Legal Med, 110(3), 134-149 (1997)
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Redd, A. J., Clifford, S. L. and Stoneking, M., Multiplex DNA typing of short-tandem-repeat loci on the Y chromosome, Biol Chem, 378(8), 923-7 (1997)

[ref1] Wilkins M.H.F., Gosling R.G. and Seeds W.E., Physical studies of nucleic acid, Nature, 67(4254) , 759-760 (1951)

[ref2] Watson J.D. and Crick F.H., Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid, Nature, 171(4356) , 737-738 (1953)

[ref3] Crick F.H.C., The Complementary Structure of DNA, Proc Nat Acad Sci USA, 40(8), 756-758 (1954)

[ref4] International Human Genome Sequencing Consortium, Finishing the euchromatic sequence of the human genome, Nature, 431, 931-945 (2004)

[ref5] The 1000 Genomes Project Consortium, A map of human genome variation from population-scale sequencing, Nature, 467, 1061–1073 (2010)

[ref6] Bhasin M.K. and Walter H., Genetics of Castes and Tribes of India, Kamla-Raj Enterprises, Delhi (2001)

[ref7] Indian Genome Variation Consortium, Genetic landscape of the people of India: a canvas for disease gene exploration, J. Genet., 87, 3–20 (2008)

[ref8] Cavalli-Sforza L.L., Menozzi P. and Piazza A., The history and geography of Human genes Princeton: Princeton University Press (1994)

[ref9] Gadgil M., Joshi N.V., Shambu Prasad U.V., Manoharan S. and Patil S., Peopling of India, In The Indian Human Heritage, Universities Press, Hyderabad, India, 100-129 (1997)

[ref10] Papiha S.S., Genetic variation in India, Hum Biol, 68, 607-628 (1996)

[ref11] Majumder P.P., People of India: Biological diversity and affinities, Evol Anthropol, 6, 100-110 (1998)

[ref12] Das K., Malhotra K.C., Mukherjee B.N., Walter H., Majumder P.P., and Papiha S.S., Population structure and genetic differentiation among 16 tribal population of Central India, Hum Biol, 68, 679-705 (1996)

[ref13] Basu A., Mukherjee N., Roy S., Sengupta S., Banerjee S., Chakraborty M., Dey B., Roy M., Roy B., Bhattacharya N.P., Roychoudhury S. and Majumder P.P., Ethnic India: A genomic view, with special reference to peopling and structure, Genome Res, 13, 2277-2290 (2003)

[ref14] Thapar R., Early India: From the origins to AD 1300, University of California Press; First Edition (2004)

[ref15] Kosambi D.D., The Culture and Civilization of Ancient India in Historical Outline, Vikas Publishing House Pvt. Ltd, New Delhi (1991)

[ref16] Cordaux R., Aunger R., Bentley G., Nasidze I., Sirajuddin S.M. and Stoneking M., Independent origins of Indian caste and tribal paternal lineages, Curr Biol, 14, 231-235 (2004)

[ref17] Singh K.S., People of India: An Introduction, Anthropological Survey of India, Calcutta (1992)

[ref18] Reich, D., Thangaraj, K., Patterson, N., Price, A. L., and Singh, L., Reconstructing Indian population history, Nature, 461, 489–495 (2009)

[ref19] Bamshad, M., Kivisild, T., Scott Watkins, W., Dixon, M. E., Ricker, C. E., Rao, B. B., Mastan Naidu, J., Ravi Prasad, B. V., Govinda Reddy, P., Rasanayagam, A., Papiha, S. S., Villems, R., Redd, A. J., Hammer, M. F., Nguyen, S. V., Carroll, M. L., Batzer, M. A. and Jorde, L. B, Genetic evidence on the origins of Indian caste populations, Genome Res, 11, 994-1004 (2001)

[ref20] de Knijff, P., Kayser, M., Caglia, A., Corach, D., Fretwell, N., Gehrig, C., Graziosi, G., Heidorn, F., Herrmann, S., Herzog, B., Hidding, M., Honda, K., Jobling, M., Krawczak, M., Leim, K., Meuser, S., Meyer, E., Oesterreich, W., Pandya, A., Parson, W., Penacino, G., Perez-Lezaun, A., Piccinini, A., Prinz, M., Schmitt, C., Schneider, P. M., Szibor, R., Teifel-Greding, J., Weichhold, G. M. and Roewer, L., Chromosome Y microsatellites: population genetic and evolutionary aspects, Int J Legal Med, 110(3), 134-149 (1997)

[ref21] Sambrook, J., Maccallum, P. and Russel, D., Molecular Cloning: A Laboratory Manual, 3rd ed. Cold Springs Harbour Press, NY (2001)

[ref22] Redd, A. J., Clifford, S. L. and Stoneking, M., Multiplex DNA typing of short-tandem-repeat loci on the Y chromosome, Biol Chem, 378(8), 923-7 (1997)